blob: 3314d00a40e0a0fa6c0d497065cf5e3b82f14635 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=eegc
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Engineering Evaluation by Gene Categorization (eegc)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-annotationdbi
r-clusterprofiler
r-deseq2
r-dose
r-edger
r-ggplot2
r-gplots
r-igraph
r-limma
r-org.hs.eg.db
r-org.mm.eg.db
r-pheatmap
r-r.utils
r-s4vectors
r-sna
r-wordcloud
)
optdepends=(
r-knitr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b454926a77b06904f3560f0c28ee1299')
b2sums=('2b020a24244315e197880675a85af2d618cb2c7384b2b7d9c30412e64e52ad806028dcfa45c7def4a2378e88e77335486a51c04e87ab37b72e5701b711b6a4d7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|