blob: 83130ac804f04be1792a93cc21d65d8b68bccf91 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ELMER
_pkgver=2.28.0
pkgname=r-${_pkgname,,}
pkgver=2.28.0
pkgrel=1
pkgdesc='Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biomart
r-circlize
r-complexheatmap
r-delayedarray
r-doparallel
r-downloader
r-dplyr
r-elmer.data
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggpubr
r-ggrepel
r-gridextra
r-gviz
r-iranges
r-magrittr
r-multiassayexperiment
r-plotly
r-plyr
r-progress
r-purrr
r-readr
r-reshape
r-reshape2
r-rmarkdown
r-rtracklayer
r-rvest
r-s4vectors
r-scales
r-stringr
r-summarizedexperiment
r-tcgabiolinks
r-tibble
r-tidyr
r-xml2
)
optdepends=(
r-annotationhub
r-biocstyle
r-covr
r-data.table
r-dt
r-experimenthub
r-genomicinteractions
r-knitr
r-r.utils
r-sesamedata
r-testthat
r-webshot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ed9b1e512e6f8fc36d532ffa3329e6f077cb2c773d21dd50daa98efa94ec5b04')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|