PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=EnMCB
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
  r-biocfilecache
  r-e1071
  r-ggplot2
  r-glmnet
  r-igraph
  r-mboost
  r-rms
  r-survivalroc
  r-survivalsvm
)
optdepends=(
  r-affycoretools
  r-biobase
  r-knitr
  r-limma
  r-plotroc
  r-rmarkdown
  r-summarizedexperiment
  r-survminer
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('1970f93fe12f889989fb8c75325570fb')
b2sums=('d69b8a30210b0dbff7172ca55c5bbc97404463632ca6ca93635424fe5e0e5bb7da790700a20995995c1dedd1cd2111b3b0d7011d3fe9edf2144d4d5f1df1db52')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}