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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ENmix
_pkgver=1.40.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Quality control and analysis tools for Illumina DNA methylation BeadChip"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biobase
r-doparallel
r-dynamictreecut
r-experimenthub
r-foreach
r-genefilter
r-geneplotter
r-gplots
r-gtools
r-illuminaio
r-impute
r-iranges
r-irlba
r-matrixstats
r-minfi
r-quadprog
r-rpmm
r-s4vectors
r-summarizedexperiment
)
checkdepends=(
r-biocgenerics
r-minfidata
r-runit
)
optdepends=(
r-biocgenerics
r-biocstyle
r-knitr
r-minfidata
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('13d61ea476496e9dd1c0f87933ee5ab1')
b2sums=('ef1f927ab3d8e8285c96b4ade53d631aa84d34888e68616af2873cac213f6b48f8ac1f0c404a19efcbe185c7ddf2e56db33a000a7d7bf26346bc111e4c0d3882')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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