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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=epistasisGA
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package to identify multi-snp effects in nuclear family studies using the GADGETS method"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
blas
lapack
r-batchtools
r-bigmemory
r-biocparallel
r-data.table
r-ggplot2
r-igraph
r-matrixstats
r-qgraph
)
makedepends=(
r-bh
r-rcpp
r-rcpparmadillo
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-kableextra
r-knitr
r-magrittr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c5d3006f0c36ed266bbd740651f435dc')
b2sums=('19c820b23ba592069040d55bcd75230a13996935fd949bd39b593ff699fb5a34bad8ca8d6aad86b23a5eb14b1b44e81cbac8567727a886e4c1d1aba8a655d466')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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