blob: 5676459bcea469ad9709f620af3a801166094e4b (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=fastreeR
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Phylogenetic, Distance and Other Calculations on VCF and Fasta Files"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-ape
r-data.table
r-dynamictreecut
r-r.utils
r-rjava
r-stringr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocfilecache
r-biocstyle
r-knitr
r-memuse
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('46541a2b13f7dd609db30ca3c85dd07f')
b2sums=('e04fde80c2307c9cc5f4bae6b715341c742ab1b1fec69db02e599d539239fb3b2beef48b6920e20089b04979b714e90ef88e253b1ae0503b5df81ae606320420')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|