PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=FEAST
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='FEAture SelcTion (FEAST) for Single-cell clustering'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biocparallel
  r-irlba
  r-matrixstats
  r-mclust
  r-sc3
  r-singlecellexperiment
  r-summarizedexperiment
  r-tscan
)
optdepends=(
  r-biocstyle
  r-ggpubr
  r-knitr
  r-rmarkdown
  r-seurat
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f577ea43d4bc65f57eb3964b1adfa58bc4b2c34259180ad465b7a3d56a068904')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: