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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=fishpond
_pkgver=2.12.0
pkgname=r-${_pkgname,,}
pkgver=2.12.0
pkgrel=1
pkgdesc='Fishpond: differential transcript and gene expression with inferential replicates'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
gcc
r
r-abind
r-genomicranges
r-gtools
r-iranges
r-jsonlite
r-matrixstats
r-qvalue
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
r-svmisc
)
optdepends=(
r-annotationdbi
r-apeglm
r-data.table
r-deseq2
r-ensdb.hsapiens.v86
r-ensembldb
r-genomeinfodb
r-genomicfeatures
r-gviz
r-knitr
r-limma
r-macrophage
r-org.hs.eg.db
r-pheatmap
r-rmarkdown
r-samr
r-testthat
r-tximeta
r-tximportdata
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ca1b3e2390d8812f7bf42de7ec2bc6f29019140e8c90158e81eb077c27bd1f1f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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