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# system requirements: GNU make, C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=FLAMES
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=1
pkgdesc='FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-bambu
r-basilisk
r-biocgenerics
r-biostrings
r-circlize
r-complexheatmap
r-cowplot
r-dplyr
r-dropletutils
r-future
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggbio
r-ggplot2
r-gridextra
r-igraph
r-jsonlite
r-magrittr
r-multiassayexperiment
r-rcolorbrewer
r-rcpp
r-reticulate
r-rhtslib
r-rsamtools
r-rtracklayer
r-s4vectors
r-scater
r-scran
r-scuttle
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-tidyr
r-withr
r-zlibbioc
)
optdepends=(
r-biocfilecache
r-biocstyle
r-geoquery
r-knitr
r-markdown
r-r.utils
r-rmarkdown
r-shortread
r-testthat
r-uwot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('da12030c47ad7d766a7a76ed97e5fb089af15fd1c78846afba7b11089efa6724')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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