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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=FRASER
_pkgver=2.2.0
pkgname=r-${_pkgname,,}
pkgver=2.2.0
pkgrel=1
pkgdesc='Find RAre Splicing Events in RNA-Seq Data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-bbmisc
r-biobase
r-biocgenerics
r-biocparallel
r-biomart
r-bsgenome
r-cowplot
r-data.table
r-delayedarray
r-delayedmatrixstats
r-extradistr
r-generics
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggrepel
r-hdf5array
r-iranges
r-matrixstats
r-outrider
r-pcamethods
r-pheatmap
r-plotly
r-prroc
r-r.utils
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rhdf5
r-rsamtools
r-rsubread
r-s4vectors
r-summarizedexperiment
r-tibble
r-vgam
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c7d0f9011b1c06efad95e0251bed267bb6e6e757a72d77df34036462ce6224af')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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