PKGBUILD


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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=FuseSOM
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
  r-analogue
  r-coop
  r-diptest
  r-fastcluster
  r-fcps
  r-fpc
  r-ggplot2
  r-ggplotify
  r-ggpubr
  r-pheatmap
  r-proxy
  r-psych
  r-s4vectors
  r-stringr
  r-summarizedexperiment
)
makedepends=(
  r-rcpp
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
  r-singlecellexperiment
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c3ce10f4ae9e1beeb75462de27e8c7ae')
b2sums=('4404537077382a63d7e5f4a1f57d529c5f36c38b74a805e44807e9d70e92b3105f297a45f2971a3dbb1ba662b407bc2f3d0f9b07a45864e8419d57b1482b2fe5')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}