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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=gage
_pkgver=2.56.0
pkgname=r-${_pkgname,,}
pkgver=2.56.0
pkgrel=1
pkgdesc='Generally Applicable Gene-set Enrichment for Pathway Analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-go.db
r-graph
r-keggrest
)
optdepends=(
r-deseq2
r-edger
r-gagedata
r-genomicalignments
r-gseabase
r-hgu133a.db
r-limma
r-org.hs.eg.db
r-pathview
r-rsamtools
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6d847a26c43317dd8261c823d0a0f8e07171c03c82448aa3e0e8624827436d1a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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