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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GAPGOM
_pkgver=1.11.0
pkgname=r-${_pkgname,,}
pkgver=1.11.0
pkgrel=4
pkgdesc='GAPGOM (novel Gene Annotation Prediction and other GO Metrics)'
arch=('any')
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-biobase
r-biocfilecache
r-data.table
r-dplyr
r-fastmatch
r-geoquery
r-go.db
r-gosemsim
r-graph
r-igraph
r-magrittr
r-matrixstats
r-org.hs.eg.db
r-org.mm.eg.db
r-plyr
r-rbgl
)
optdepends=(
r-ggplot2
r-kableextra
r-knitr
r-org.ag.eg.db
r-org.at.tair.db
r-org.bt.eg.db
r-org.ce.eg.db
r-org.cf.eg.db
r-org.dm.eg.db
r-org.dr.eg.db
r-org.eck12.eg.db
r-org.ecsakai.eg.db
r-org.gg.eg.db
r-org.mmu.eg.db
r-org.pf.plasmo.db
r-org.pt.eg.db
r-org.rn.eg.db
r-org.sc.sgd.db
r-org.ss.eg.db
r-org.xl.eg.db
r-prettydoc
r-profvis
r-pryr
r-reshape2
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('df7826b3bc9a7e5063d6b70e4de3ba5d5ddddff6d82bce56cbed93fe0b3f896a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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