PKGBUILD


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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=gDNAinRNAseqData
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="RNA-seq data with different levels of gDNA contamination"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r-biocgenerics
  r-experimenthub
  r-rcurl
  r-rsamtools
  r-xml
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5f7bd99cdabbc38e7e172f553040eb68')
b2sums=('49924f944b71d5f7b4ebbe1f2e98491a3feb0b3c3508e89fef70c30c7e8f92793d88531b7d6608f5b37aade56a913a5536fff9807fdfae388e779d7798fd27f0')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}