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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDRimport
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Package for handling the import of dose-response data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-assertthat
r-bumpymatrix
r-checkmate
r-coregx
r-data.table
r-futile.logger
r-gdrutils
r-magrittr
r-multiassayexperiment
r-openxlsx
r-pharmacogx
r-readxl
r-rio
r-s4vectors
r-stringi
r-summarizedexperiment
r-tibble
r-xml
r-yaml
)
checkdepends=(
r-qs
r-testthat
)
optdepends=(
r-biocstyle
r-gdrstyle
r-gdrtestdata
r-knitr
r-purrr
r-qs
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('41d154f693ba371239b248a591d0601e')
b2sums=('a57658e04158fe8d0e97f42744cda1fe06abf0d093d695d6f2b012d24aafdbafd7c115ce6336f8a2f7649d84dd8145ac5f6e4f314a82c097d40d8ca03e1bb002')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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