blob: 888671238c0ec11711bbaf5cb76af9356002326a (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDRimport
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Package for handling the import of dose-response data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-assertthat
r-bumpymatrix
r-checkmate
r-coregx
r-data.table
r-futile.logger
r-gdrutils
r-magrittr
r-multiassayexperiment
r-openxlsx
r-pharmacogx
r-readxl
r-rio
r-s4vectors
r-stringi
r-summarizedexperiment
r-tibble
r-xml
r-yaml
)
checkdepends=(
r-qs
r-testthat
)
optdepends=(
r-biocstyle
r-gdrstyle
r-gdrtestdata
r-knitr
r-purrr
r-qs
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('92d70f4730716895a911a22b8d1999be')
b2sums=('e0158fa33ffce2c66ee2ea720743cb17986c1a70cda67bcd06118e3b8c285d72cc4a0e494cfa017807e79942f47ff8e4596eddf8406fd33ac07a28456b0a609d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|