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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=geneXtendeR
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='Optimized Functional Annotation Of ChIP-seq Data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-biocstyle
r-data.table
r-dplyr
r-go.db
r-networkd3
r-org.rn.eg.db
r-rcolorbrewer
r-rtracklayer
r-snowballc
r-tm
r-wordcloud
)
optdepends=(
r-knitr
r-org.ag.eg.db
r-org.bt.eg.db
r-org.ce.eg.db
r-org.cf.eg.db
r-org.dm.eg.db
r-org.dr.eg.db
r-org.gg.eg.db
r-org.hs.eg.db
r-org.mm.eg.db
r-org.pt.eg.db
r-org.sc.sgd.db
r-org.ss.eg.db
r-org.xl.eg.db
r-rmarkdown
r-rtracklayer
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c818968234a6d010b1ce7b1ba385267c535c6d133cc809b2982e29956875362e')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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