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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GenoGAM
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=2.14.0
pkgrel=4
pkgdesc='A GAM based framework for analysis of ChIP-Seq data'
arch=('x86_64')
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
r-biocparallel
r-biostrings
r-data.table
r-delayedarray
r-deseq2
r-futile.logger
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-hdf5array
r-iranges
r-rcpp
r-rcpparmadillo
r-rhdf5
r-rsamtools
r-s4vectors
r-sparseinv
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-chipseq
r-genefilter
r-ggplot2
r-knitr
r-lsd
r-rmarkdown
r-testthat
)
makedepends=(
git
)
source=("git+https://git.bioconductor.org/packages/${_pkgname}")
sha256sums=('SKIP')
build() {
tar -zcvf ${_pkgname}_${_pkgver}.tar.gz ${_pkgname}
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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