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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=GenomAutomorphism
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Compute the automorphisms between DNA's Abelian group representations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel
r-biostrings
r-data.table
r-doparallel
r-dplyr
r-foreach
r-genomeinfodb
r-genomicranges
r-iranges
r-numbers
r-s4vectors
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('36ebcd90b454dc7450e875730537811b')
b2sums=('33be5f5772966e34b9a0d4a637e31cb6f5fc0c21688b82be58caaa6edcd7fc7ccc80ba1a7b30edaf79cd06b3be36342283fd1908e129261595cb0d1d7a461468')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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