blob: f7f158d7874fe0244ae5b05a96ce811b50bb95db (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=GenomAutomorphism
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Compute the automorphisms between DNA's Abelian group representations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel
r-biostrings
r-data.table
r-doparallel
r-dplyr
r-foreach
r-genomeinfodb
r-genomicranges
r-iranges
r-matrixstats
r-numbers
r-s4vectors
r-xvector
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('52ceb7627ca1d85ba0fc37a3461b393f')
b2sums=('967576aea4735f0cf1d50b089db17bacc75f6950f97b142c8a03b37040226c6b79ebad3cd4d967208609968a98504d4a7fe821ff93450dec9bcd27c6ac6c8290')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|