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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GenomicFeatures
_pkgver=1.54.4
pkgname=r-${_pkgname,,}
pkgver=1.54.4
pkgrel=1
pkgdesc='Conveniently import and query gene models'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-biobase
r-biocgenerics
r-biocio
r-biomart
r-biostrings
r-dbi
r-genomeinfodb
r-genomicranges
r-iranges
r-rcurl
r-rsqlite
r-rtracklayer
r-s4vectors
r-xvector
)
optdepends=(
r-annotationfilter
r-biocstyle
r-bsgenome
r-bsgenome.celegans.ucsc.ce11
r-bsgenome.dmelanogaster.ucsc.dm3
r-bsgenome.hsapiens.ucsc.hg19
r-ensembldb
r-fdb.ucsc.trnas
r-genomicalignments
r-knitr
r-markdown
r-mirbase.db
r-org.hs.eg.db
r-org.mm.eg.db
r-pasillabamsubset
r-rmariadb
r-rsamtools
r-runit
r-snplocs.hsapiens.dbsnp144.grch38
r-txdb.celegans.ucsc.ce11.ensgene
r-txdb.dmelanogaster.ucsc.dm3.ensgene
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg19.lincrnastranscripts
r-txdb.hsapiens.ucsc.hg38.knowngene
r-txdb.mmusculus.ucsc.mm10.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e3fa9c9fee19be43ebfc1b0c8018384d11b9847ef52a4a95b887628132d94e3c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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