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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GenomicFiles
_pkgver=1.40.0
pkgname=r-${_pkgname,,}
pkgver=1.40.0
pkgrel=1
pkgdesc='Distributed computing by file or by range'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocgenerics
r-biocparallel
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-iranges
r-matrixgenerics
r-rsamtools
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biocstyle
r-biostrings
r-deepsnv
r-genefilter
r-homo.sapiens
r-knitr
r-rnaseqdata.hnrnpc.bam.chr14
r-runit
r-snpstats
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d16cb66995e761aafe533564b80d0ce376c96ab3fdcb196f364b9ab7b12a16ac')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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