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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GenomicScores
_pkgver=2.14.3
pkgname=r-${_pkgname,,}
pkgver=2.14.3
pkgrel=1
pkgdesc='Infrastructure to work with genomewide position-specific scores'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationhub
r-biobase
r-biocfilecache
r-biocgenerics
r-biocmanager
r-biostrings
r-delayedarray
r-genomeinfodb
r-genomicranges
r-hdf5array
r-httr
r-iranges
r-rhdf5
r-s4vectors
r-xml
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-data.table
r-dt
r-gwascat
r-knitr
r-mafdb.1kgenomes.phase1.hs37d5
r-magrittr
r-phastcons100way.ucsc.hg19
r-rcolorbrewer
r-rmarkdown
r-runit
r-shiny
r-shinycustomloader
r-shinydashboard
r-shinyjs
r-snplocs.hsapiens.dbsnp144.grch37
r-txdb.hsapiens.ucsc.hg19.knowngene
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a98eb24b700041b8756aa8f15295a7018ae45d6698a5ac9e97e4435eea721e66')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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