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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GeoDiff
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Count model based differential expression and normalization on GeoMx RNA data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biobase
r-geomxtools
r-lme4
r-nanostringnctools
r-plyr
r-rcpp
r-rcpparmadillo
r-robust
r-roptim
r-testthat
r-withr
)
optdepends=(
r-dplyr
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('bbfb99c3acf1c60f3331ff12ffdcc3c8f3ac68865056549f22d033c4f128c5ae')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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