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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GEOexplorer
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="a webserver for gene expression analysis and visualisation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biobase
r-car
r-dt
r-edger
r-enrichr
r-factoextra
r-geoquery
r-ggplot2
r-heatmaply
r-htmltools
r-httr
r-impute
r-knitr
r-limma
r-markdown
r-pheatmap
r-plotly
r-r.utils
r-readxl
r-scales
r-shiny
r-shinybusy
r-shinycssloaders
r-shinyheatmaply
r-stringr
r-sva
r-umap
r-xfun
r-xml
r-xml2
)
checkdepends=(
r-testthat
)
optdepends=(
r-rmarkdown
r-testthat
r-usethis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c5a798eedfe4bcaf2869700911560363')
b2sums=('902ee857cf064adb9370e209f28f1c002119907bd924af303cd28bed3b356b06b43036f3040995fae9ee3342a8e4e4348aa8a313e74af8954d9f68b55a6e49fd')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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