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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gg4way
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="4way Plots of Differential Expression"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-deseq2
r-dplyr
r-edger
r-ggplot2
r-ggrepel
r-glue
r-janitor
r-limma
r-magrittr
r-purrr
r-rlang
r-scales
r-stringr
r-tibble
r-tidyr
)
checkdepends=(
r-testthat
)
optdepends=(
r-airway
r-biocstyle
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c85125a8df2d8d71dfa4892b9d815865')
b2sums=('ec3b15bc8b368204fc860c318b5864d2f1e45e868d95791e314b0aeb666a4f4c0300c5336f5ff47ff4db265bc67fecabbebe4795b7ff0e08436a6e72ea6d80cb')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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