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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=ggkegg
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Analyzing and visualizing KEGG information using the grammar of graphics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocfilecache
r-data.table
r-dplyr
r-ggplot2
r-ggraph
r-gtable
r-igraph
r-magick
r-patchwork
r-shadowtext
r-stringr
r-tibble
r-tidygraph
r-xml
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-bnlearn
r-clusterprofiler
r-knitr
r-rmarkdown
r-testthat
r-annotationdbi
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6fb58e5532b3978348b0b1a9ab57a2ad')
b2sums=('39fb158aa736d7eb6e58be970a25504e7b067bf726bde3466f31670d00a6e06bdb727bb54d3267b6ca465882538cb7474bc3411e313be0573553e04cf20dbd7c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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