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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=ggsc
_pkgver=1.0.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Visualizing Single Cell Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
blas
r-cli
r-dplyr
r-ggplot2
r-rcpp
r-rcppparallel
r-rlang
r-scattermore
r-seurat
r-singlecellexperiment
r-summarizedexperiment
r-tibble
r-tidydr
r-tidyr
r-yulab.utils
)
makedepends=(
r-rcpparmadillo
)
checkdepends=(
r-scuttle
r-testthat
)
optdepends=(
r-aplot
r-biocparallel
r-forcats
r-ggforce
r-ggnewscale
r-igraph
r-knitr
r-ks
r-prettydoc
r-rmarkdown
r-scater
r-scran
r-scuttle
r-seuratobject
r-sf
r-shadowtext
r-spatialexperiment
r-stexampledata
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4c0a1656e9943cadf436244c65b18242')
b2sums=('d8d67ddaf34fbdb71347226f6e916c22fd1338716a2b308e15b6d799e133dd9b9b7fba108b7e5792aed38c65efb4469cf9241cb2f3f50b3c2301c79cf169c228')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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