summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: 7cd18d59a1c52f9fe09f22a237055b0f391fb898 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=ggspavis
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Visualization functions for spatial transcriptomics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
  r-ggplot2
  r-ggrepel
  r-ggside
  r-rcolorbrewer
  r-scales
  r-singlecellexperiment
  r-spatialexperiment
  r-summarizedexperiment
)
optdepends=(
  r-biocstyle
  r-bumpymatrix
  r-knitr
  r-patchwork
  r-rmarkdown
  r-scater
  r-scran
  r-stexampledata
  r-testthat
  r-uwot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0ba6b2dd3f785e6a84d7749d57e9d63e')
b2sums=('4be6a8cea5dff3dd721bcc4584e4133595ffe762a7467cdbd8b20e5aae816f4820b9bac413bc9a9a69cea1379d69a832690502057c2c77958e5c3f4097e52c28')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"

  install -d "$pkgdir/usr/share/licenses/$pkgname"
  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}