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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ggspavis
_pkgver=1.18.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Visualization functions for spatial transcriptomics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-ggplot2
r-ggrepel
r-ggside
r-rcolorbrewer
r-scales
r-singlecellexperiment
r-spatialexperiment
r-summarizedexperiment
)
optdepends=(
r-arrow
r-biocstyle
r-bumpymatrix
r-knitr
r-osta.data
r-patchwork
r-rmarkdown
r-scater
r-scran
r-stexampledata
r-testthat
r-uwot
r-visiumio
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0fa9893fb44a7942ff2d69b9e59ce539')
b2sums=('9201104ab6dea197945a0bc60872ffa4b470618844e5d4d17ae9d3ea757e4cd609368e69f1c80ad2850a8b4fd3a3049a3ce8cc3deebf19be26ee6c4c5d8a8854')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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