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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=glmGamPoi
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Fit a Gamma-Poisson Generalized Linear Model'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-beachmat
r-biocgenerics
r-delayedarray
r-delayedmatrixstats
r-hdf5array
r-matrixgenerics
r-matrixstats
r-rcpp
r-rcpparmadillo
r-rlang
r-singlecellexperiment
r-summarizedexperiment
r-vctrs
)
optdepends=(
r-beachmat
r-bench
r-biocparallel
r-biocstyle
r-deseq2
r-dplyr
r-edger
r-ggplot2
r-knitr
r-limma
r-mass
r-matrix
r-muscdata
r-rmarkdown
r-scran
r-statmod
r-tenxpbmcdata
r-testthat
r-zoo
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('36f57f991824f95e91c6a91423fc20b5f6f32cbbc7ab15e6b50534fa16cd2d90')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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