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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=GNOSIS
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Genomics explorer using statistical and survival analysis in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-car
r-cbioportaldata
r-comparegroups
r-dashboardthemes
r-desctools
r-dt
r-fabricatr
r-fontawesome
r-maftools
r-magrittr
r-operator.tools
r-partykit
r-rcolorbrewer
r-reshape2
r-rstatix
r-shiny
r-shinycssloaders
r-shinydashboard
r-shinydashboardplus
r-shinyjs
r-shinylogs
r-shinymeta
r-shinywidgets
r-survminer
r-tidyverse
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4be76b3bc8c342411ef7f8758540b5e2')
b2sums=('7f743302ce0cdde6b84401f12f77b6570d96fc2a348ec2986204896dab29b3b152dca5ee9ec18fc9eb3da6085c3a8b4bd59d7ce30743b0e658e3d9a58c95bb04')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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