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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=GraphAlignment
_pkgver=1.68.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="GraphAlignment"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('LicenseRef-GraphAlignment')
depends=(
  r
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b8ed3cbb53c4275212f74f61f7966a3c')
b2sums=('7f5a7af9a04680cee8794d4179dc47ead7beee3e2adde7e06cddcc8afe39c185ecfeb8bc55b91c7f40d12ce9e80abfaf8c0248dce9d68d51e72bc194770c2e7b')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"

  install -d "$pkgdir/usr/share/licenses/$pkgname"
  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}