summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: 9eb388bb20b7d827bff8d2b1c509f39c5aa3d51b (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=GSVA
_pkgver=1.50.0
pkgname=r-${_pkgname,,}
pkgver=1.50.0
pkgrel=1
pkgdesc='Gene Set Variation Analysis for microarray and RNA-seq data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biobase
  r-biocparallel
  r-biocsingular
  r-delayedarray
  r-delayedmatrixstats
  r-gseabase
  r-hdf5array
  r-iranges
  r-s4vectors
  r-singlecellexperiment
  r-sparsematrixstats
  r-summarizedexperiment
)
optdepends=(
  r-biocgenerics
  r-biocstyle
  r-data.table
  r-edger
  r-future
  r-genefilter
  r-ggplot2
  r-gsvadata
  r-knitr
  r-limma
  r-org.hs.eg.db
  r-plotly
  r-promises
  r-rcolorbrewer
  r-rmarkdown
  r-runit
  r-shiny
  r-shinybusy
  r-shinydashboard
  r-shinyjs
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('df54a2af6b5c27f7be70ee2ae8bcf8a8c41ac826964d8144731a8e58dd918507')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: