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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GSVA
_pkgver=2.0.7
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Gene Set Variation Analysis for Microarray and RNA-Seq Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-biobase
r-biocparallel
r-biocsingular
r-cli
r-delayedarray
r-delayedmatrixstats
r-gseabase
r-hdf5array
r-iranges
r-s4vectors
r-singlecellexperiment
r-sparsematrixstats
r-spatialexperiment
r-summarizedexperiment
)
optdepends=(
r-biocgenerics
r-biocstyle
r-data.table
r-edger
r-future
r-genefilter
r-ggplot2
r-gsvadata
r-knitr
r-limma
r-org.hs.eg.db
r-plotly
r-promises
r-rcolorbrewer
r-rmarkdown
r-runit
r-shiny
r-shinybusy
r-shinydashboard
r-shinyjs
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cea42d1a52c16a99b865cfedf38430ac')
b2sums=('02d2971a1e9535427c3c13099710e1f70b638ed62e64e2115b20d7c3286f92bf006c8ffd78738e728403e10a89a424eeda244535f2199fed06876baa9c10faa0')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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