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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GSVA
_pkgver=2.2.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Gene Set Variation Analysis for Microarray and RNA-Seq Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-biobase
r-biocparallel
r-biocsingular
r-cli
r-delayedarray
r-delayedmatrixstats
r-gseabase
r-hdf5array
r-iranges
r-s4vectors
r-singlecellexperiment
r-sparsematrixstats
r-spatialexperiment
r-summarizedexperiment
)
optdepends=(
r-biocgenerics
r-biocstyle
r-data.table
r-edger
r-future
r-genefilter
r-ggplot2
r-gsvadata
r-knitr
r-limma
r-org.hs.eg.db
r-plotly
r-promises
r-rcolorbrewer
r-rmarkdown
r-runit
r-shiny
r-shinybusy
r-shinydashboard
r-shinyjs
r-sva
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('173ba677331c2cca55734bc82026c7c4')
b2sums=('04e87ddc8146dfad631af1c28c2c4a1156611b3226652245f0d9f6a07a3a3108f4988bc4c6f2571eef37b123c847432f3c338796d57bfb3d838a768e3f428df1')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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