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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GWASTools
_pkgver=1.50.0
pkgname=r-${_pkgname,,}
pkgver=1.50.0
pkgrel=1
pkgdesc='Tools for Genome Wide Association Studies'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biobase
r-data.table
r-dbi
r-dnacopy
r-gdsfmt
r-gwasexacthw
r-lmtest
r-logistf
r-quantsmooth
r-rsqlite
r-sandwich
)
optdepends=(
r-biocgenerics
r-biocstyle
r-biostrings
r-genomicranges
r-gwasdata
r-iranges
r-knitr
r-ncdf4
r-parallel
r-runit
r-s4vectors
r-snprelate
r-snpstats
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('84db4b6f555a88585d64ef4c8c423ed8e1d808fe7c8994760e1a24a6b8d87804')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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