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# system requirements: GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=h5vc
_pkgver=2.36.0
pkgname=r-${_pkgname,,}
pkgver=2.36.0
pkgrel=1
pkgdesc='Managing alignment tallies using a hdf5 backend'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-abind
r-batchjobs
r-biocparallel
r-biostrings
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gridextra
r-h5vcdata
r-iranges
r-reshape
r-rhdf5
r-rhtslib
r-rsamtools
r-s4vectors
make
)
optdepends=(
r-biocgenerics
r-biomart
r-bsgenome.hsapiens.ncbi.grch38
r-bsgenome.hsapiens.ucsc.hg19
r-knitr
r-locfit
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('dfa0e6f0e4fa3b36b857a11ab671ad55fbd4afa2a79b2f71f7b9291faa737b40')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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