PKGBUILD


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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=HERON
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Hierarchical Epitope pROtein biNding"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
  r-data.table
  r-genomicranges
  r-harmonicmeanp
  r-iranges
  r-limma
  r-matrixstats
  r-metap
  r-s4vectors
  r-spdep
  r-summarizedexperiment
)
checkdepends=(
  r-testthat
)
optdepends=(
  r-knitr
  r-rmarkdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d41b40db5c26c69733c46f4396dfcf4c')
b2sums=('bc060345fa901528093df814188ade198b19ca2248e7e1dc9a205a1ff4634260bf4c5f3c7392982842e1d8270c3ef5d9f852553d21cd2bf6075106139638f8b5')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

check() {
  cd "$_pkgname/tests"
  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}