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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=HiCool
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Processing Hi-C raw data within R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-basilisk
r-biocio
r-dplyr
r-genomicranges
r-hicexperiment
r-interactionset
r-iranges
r-plotly
r-reticulate
r-rmarkdown
r-rmdformats
r-s4vectors
r-sessioninfo
r-stringr
r-vroom
)
optdepends=(
r-annotationhub
r-biocfilecache
r-biocstyle
r-hicontacts
r-hicontactsdata
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7c441fb3e72a20d37fd685dacd43830c')
b2sums=('9aefe562fab88aa683c7b4908ebf0be838720a95ca0fc43d57f531ab91eaa4f17dd848ba18858ff964badd6c5dc00b6929ae767bb380e05757af8b8762456751')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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