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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=HiCool
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Processing Hi-C raw data within R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-basilisk
r-biocio
r-dplyr
r-genomicranges
r-hicexperiment
r-interactionset
r-iranges
r-plotly
r-reticulate
r-rmarkdown
r-rmdformats
r-s4vectors
r-sessioninfo
r-stringr
r-vroom
)
optdepends=(
r-annotationhub
r-biocfilecache
r-biocstyle
r-hicontacts
r-hicontactsdata
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e17b49313cd3d6d77cfb5c858a4e90fb')
b2sums=('1d8b635367a7e2703f0c5bcf6845a678cbf64f23b56bc796cfedfd0f7d0a2c648cf73c31e9ffbf168815e5edf6ecf46ba499fd2d26faac7ea8ef915c9524d056')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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