blob: db8875726d627326ebdd90522a9d25964243ca49 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=hicVennDiagram
_pkgver=1.6.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Venn Diagram for genomic interaction data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-complexupset
r-eulerr
r-genomeinfodb
r-genomicranges
r-ggplot2
r-htmlwidgets
r-interactionset
r-iranges
r-reshape2
r-rtracklayer
r-s4vectors
r-svglite
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-chippeakanno
r-knitr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d34fb9c97e5af2a18d85d31a1920249b')
b2sums=('f80ed0b0541b6433cf81995db95caa48a5a7a843716feb9a763f0b53ebc5a229191c49edfc3f471c477c7af43f22bef012e5646c7acf4a4e99a39143bc96f750')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|