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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=hicVennDiagram
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Venn Diagram for genomic interaction data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-complexupset
r-eulerr
r-genomeinfodb
r-genomicranges
r-ggplot2
r-htmlwidgets
r-interactionset
r-iranges
r-reshape2
r-rtracklayer
r-s4vectors
r-svglite
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-chippeakanno
r-knitr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d8d59a4908e4a6795fcbbae1b97c6783')
b2sums=('044047a119d3aa35cdb35bdf9983b25c0df09596f17ab783402f6b4f2296085f7d7ec4fd59a4d898faf0b38206efd584da193e51ed99a3fb71858c1cbdd94b14')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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