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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: sukanka <su975853527@gmail.com>
_pkgname=HPO.db
_pkgver=0.99.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="A set of annotation maps describing the entire Human Phenotype Ontology"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-annotationhub
r-biocfilecache
r-dbi
)
checkdepends=(
r-testthat
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/data/annotation/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('977cfb31ff344c58fd2dd0a2c6b765ab')
b2sums=('7dc45d9abc7bdf0a14e4a4e4dd1bd85f678883ae394c75108596641c8dea57d057c40d23951b27c4723eca0df637acace42d5793cb637e177cb143240de20b85')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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