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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=HTSeqGenie
_pkgver=4.34.0
pkgname=r-${_pkgname,,}
pkgver=4.34.0
pkgrel=1
pkgdesc='A NGS analysis pipeline.'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocgenerics
r-biocparallel
r-biostrings
r-cairo
r-chipseq
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gmapr
r-hwriter
r-iranges
r-rsamtools
r-rtracklayer
r-s4vectors
r-shortread
r-summarizedexperiment
r-variantannotation
r-varianttools
)
optdepends=(
r-lungcancerlines
r-org.hs.eg.db
r-runit
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b04574f8a34167a659612b2dd9321643d5143839b38647776f327d192324e0da')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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