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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ideal
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='Interactive Differential Expression AnaLysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-base64enc
r-biocparallel
r-deseq2
r-dplyr
r-dt
r-genomicranges
r-ggplot2
r-ggrepel
r-go.db
r-goseq
r-gostats
r-gplots
r-heatmaply
r-ihw
r-iranges
r-knitr
r-limma
r-pcaexplorer
r-pheatmap
r-plotly
r-rentrez
r-rintrojs
r-rlang
r-rmarkdown
r-s4vectors
r-shiny
r-shinyace
r-shinybs
r-shinydashboard
r-stringr
r-summarizedexperiment
r-topgo
r-upsetr
)
optdepends=(
r-airway
r-biocstyle
r-deformats
r-edger
r-markdown
r-org.hs.eg.db
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e20edb643b7ee679a7229648655c4819933896e409eb1acd82bf9d473f57b8ba')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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