PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=ILoReg
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="a tool for high-resolution cell population identification from scRNA-Seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-aricode
  r-cowplot
  r-dendextend
  r-desctools
  r-dorng
  r-dosnow
  r-dplyr
  r-fastcluster
  r-foreach
  r-ggplot2
  r-liblinear
  r-paralleldist
  r-pheatmap
  r-plyr
  r-reshape2
  r-rspectra
  r-rtsne
  r-s4vectors
  r-scales
  r-singlecellexperiment
  r-sparsem
  r-summarizedexperiment
  r-umap
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5a620ffc3e606c3225321162fd3e0f76')
b2sums=('0acc3a3be07a237c0a447e2fcfc9de5a3405bafe9587faf3ae238cf8c6d874cddd9b3ccecd97002612a0bea249b23f547e0a81a5dbda768ec9fe4c07bdc9436a')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}