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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ILoReg
_pkgver=1.12.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="a tool for high-resolution cell population identification from scRNA-Seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-aricode
r-cowplot
r-dendextend
r-desctools
r-dorng
r-dosnow
r-dplyr
r-fastcluster
r-foreach
r-ggplot2
r-liblinear
r-paralleldist
r-pheatmap
r-plyr
r-reshape2
r-rspectra
r-rtsne
r-s4vectors
r-scales
r-singlecellexperiment
r-sparsem
r-summarizedexperiment
r-umap
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a1f0a2d1222e84e1e0d0100600cf98b1')
b2sums=('aba392206e806cf0d5caf257c93869107537e232f3360843b73ac93f5d2a160b02d8d0e10ad4fc782cb162277041d6ecd97e0036d882ed6f6afcab1fb02901f6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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