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# system requirements: JAGS 4.x.y
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=infercnv
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=1.20.0
pkgrel=1
pkgdesc='Infer Copy Number Variation from Single-Cell RNA-Seq Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('BSD')
depends=(
r
r-ape
r-argparse
r-biocgenerics
r-catools
r-coda
r-coin
r-digest
r-doparallel
r-dplyr
r-edger
r-fastcluster
r-fitdistrplus
r-foreach
r-futile.logger
r-future
r-ggplot2
r-gplots
r-gridextra
r-hiddenmarkov
r-igraph
r-paralleldist
r-phyclust
r-rann
r-rcolorbrewer
r-reshape2
r-rjags
r-seurat
r-singlecellexperiment
r-summarizedexperiment
r-tidyr
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cd7baf7107beee52484e70abc6a48edb09ec877f734226131336adffb14b28ba')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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