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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=InPAS
_pkgver=2.12.0
pkgname=r-${_pkgname,,}
pkgver=2.12.0
pkgrel=1
pkgdesc='A Bioconductor package for identifying novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-batchtools
r-biobase
r-biostrings
r-bsgenome
r-cleanupdtseq
r-depmixs4
r-dplyr
r-flock
r-future
r-future.apply
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-iranges
r-limma
r-magrittr
r-parallelly
r-plyranges
r-preprocesscore
r-readr
r-reshape2
r-rsqlite
r-s4vectors
)
optdepends=(
r-biocgenerics
r-biocmanager
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.mmusculus.ucsc.mm10
r-ensdb.hsapiens.v86
r-ensdb.mmusculus.v79
r-grdevices
r-knitr
r-markdown
r-rmarkdown
r-rtracklayer
r-runit
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.mmusculus.ucsc.mm10.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ab2408b602090269454e32767197f571b9890ce4673fd20c6ae5e31e336a1f16')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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