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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=interactiveDisplay
_pkgver=1.42.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Package for enabling powerful shiny web displays of Bioconductor objects"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biocgenerics
r-category
r-ggplot2
r-gridsvg
r-interactivedisplaybase
r-plyr
r-rcolorbrewer
r-reshape2
r-shiny
r-xml
)
optdepends=(
r-biobase
r-genomicranges
r-ggbio
r-go.db
r-gostats
r-gplots
r-gviz
r-hgu95av2.db
r-knitr
r-metagenomeseq
r-rtracklayer
r-runit
r-summarizedexperiment
r-vegan
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix-install.patch")
md5sums=('a58ec02cc262479f0fde58e20f8e9506'
'f3e9aa31acfa87ff679676bd8e433bf8')
b2sums=('fc5a0b2215780ab9fa95add14035a6c55f4df046034ea09842f60ae17e88563bf357fb4dd9c046cf8059154067c238560818f8deb1f88363eb7450382993dc4e'
'c0347a4e255e6123aa5a418b9432f001afee872b963a4b4b4cc9b38c3015718bd7944118e87dcc5b9f8f9ce9c85bcb3b49c0fef17d2293e2460a7eda2a98844b')
prepare() {
# prevent unintended installing of BiocManager
patch -Np1 -i fix-install.patch
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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