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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=IntEREst
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Intron-Exon Retention Estimator"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-biocgenerics
r-biocparallel
r-biostrings
r-dbi
r-deseq2
r-dexseq
r-edger
r-genomicalignments
r-genomicfeatures
r-genomicfiles
r-genomicranges
r-iranges
r-rmysql
r-rsamtools
r-s4vectors
r-seqinr
r-seqlogo
r-summarizedexperiment
r-txdbmaker
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-clinfun
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('34b2ef2a05b7c64d9ca8091957da686f')
b2sums=('5ddc5e1e14b43223671c5a7452440a034033aa7983a66b4e08fb12c58f9e55f5f7339e61aaa2640148773703463450a6323d40492822eee550a4af53bbcb5a7d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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