blob: 63cc1d4baebd4090954f3aa9616c36ef651c247a (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=IntEREst
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Intron-Exon Retention Estimator"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-biocgenerics
r-biocparallel
r-biostrings
r-dbi
r-deseq2
r-dexseq
r-edger
r-genomicalignments
r-genomicfeatures
r-genomicfiles
r-genomicranges
r-iranges
r-rmariadb
r-rsamtools
r-s4vectors
r-seqinr
r-seqlogo
r-summarizedexperiment
r-txdbmaker
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-clinfun
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e7bde0f67566db81b8b1dbe3571153a2')
b2sums=('1eca13714f4809f89229e6bbcfb41a04dcf120cc9eecbcea77b0518cce3ad4ececad7db2636f544bc825f03c8a22b7be47dd5f6cf8d8f29bc8c9446564a37471')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|