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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=IntEREst
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=1
pkgdesc='Intron-Exon Retention Estimator'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biocparallel
r-biostrings
r-dbi
r-deseq2
r-dexseq
r-edger
r-genomicalignments
r-genomicfeatures
r-genomicfiles
r-genomicranges
r-iranges
r-rmysql
r-rsamtools
r-s4vectors
r-seqinr
r-seqlogo
r-summarizedexperiment
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-clinfun
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ee1f9d05316744a28bd404f2041c0e63438e8453e5456e783781e9f9235b473f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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