blob: af5a0f18f74b78a7093129547b4c66abc7084cc3 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=IntOMICS
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Integrative analysis of multi-omics data to infer regulatory networks"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-bestnormalize
r-bnlearn
r-bnstruct
r-cowplot
r-ggplot2
r-ggraph
r-gplots
r-igraph
r-matrixstats
r-numbers
r-rcolorbrewer
r-rlang
r-summarizedexperiment
)
checkdepends=(
r-multiassayexperiment
r-testthat
)
optdepends=(
r-biocstyle
r-curatedtcgadata
r-knitr
r-rmarkdown
r-tcgautils
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('61628ea37535123f71455b77b194b08c')
b2sums=('f77be18c5c62c54afeaa69c7d5b9fa909d60eaa241a3fc133a0d4300cfa2811ea9cdc740dbeabf3525ae602f44c3e4a4f4ef85f63732e315e5503e24a7b2c944')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|