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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=iSEE
_pkgver=2.20.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive SummarizedExperiment Explorer"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocgenerics
r-circlize
r-colourpicker
r-complexheatmap
r-dt
r-ggplot2
r-ggrepel
r-igraph
r-listviewer
r-rintrojs
r-s4vectors
r-shiny
r-shinyace
r-shinydashboard
r-shinyjs
r-shinywidgets
r-singlecellexperiment
r-summarizedexperiment
r-vipor
r-viridislite
)
optdepends=(
r-biocstyle
r-covr
r-delayedarray
r-genomicranges
r-hdf5array
r-htmltools
r-knitr
r-rcolorbrewer
r-rmarkdown
r-scater
r-scrnaseq
r-tenxpbmcdata
r-testthat
r-viridis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7ff850817446b8be5649a31dfb720c92')
b2sums=('9879984e1cfb4f8d049c09957875ea002b7694fa0a9b7f306ea2e9796c3268c899fab90417bcdf26da3239e92f3a7eb4eecce2b7c750acba8244747f961748e6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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