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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=iSEEindex
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="iSEE extension for a landing page to a custom collection of data sets"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocfilecache
r-dt
r-isee
r-paws.storage
r-rintrojs
r-shiny
r-shinydashboard
r-shinyjs
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-urltools
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5ec09044fa2963f40e87f633425ea355')
b2sums=('6dad5b2d664e208863eb0ff34084e88d26ebca65a4ca90fb07590d2f2d4043b144f71b06fa91455e2f3751f3cee93702c333586bc568ae3b6a1463cb07710ebf')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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