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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=isomiRs
_pkgver=1.36.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Analyze isomiRs and miRNAs from small RNA-seq"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-annotationdbi
r-biobase
r-biocgenerics
r-broom
r-cowplot
r-degreport
r-deseq2
r-dplyr
r-genomicranges
r-ggally
r-ggplot2
r-gplots
r-gridextra
r-gtools
r-iranges
r-limma
r-rcolorbrewer
r-readr
r-reshape
r-rlang
r-s4vectors
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
)
optdepends=(
r-biocstyle
r-knitr
r-org.mm.eg.db
r-pheatmap
r-rmarkdown
r-targetscan.hs.eg.db
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('1a0255ce19a5ad3f7a22c5c64a816bd2')
b2sums=('4abc2b8e23389821bd10e0d5cd1c3d3690498e4ef0206c7144020a6f9f67135ea26ff3e7e7f0b83cd350f3f806d025d2809e88e4085a06c080ed8e3b4a94c5cf')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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