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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=karyoploteR
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='Plot customizable linear genomes displaying arbitrary data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-bamsignals
r-bezier
r-biovizbase
r-digest
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-memoise
r-regioner
r-rsamtools
r-rtracklayer
r-s4vectors
r-variantannotation
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg19.masked
r-knitr
r-magrittr
r-markdown
r-org.hs.eg.db
r-org.mm.eg.db
r-pasillabamsubset
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.mmusculus.ucsc.mm10.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4118fadaba72b8493da7f38369b347ad416f98597d0302a131206950c4a5294b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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