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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=lefser
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="R implementation of the LEfSE method for microbiome biomarker discovery"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-coin
r-dplyr
r-ggplot2
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-covr
r-curatedmetagenomicdata
r-knitr
r-phyloseq
r-pkgdown
r-rmarkdown
r-testthat
r-withr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f092ce758deedacc39855a98cfc06849')
b2sums=('404f6a5b4eaf7b74020ca95e47d31e6aa2a783aa9d14a1b4ea95e8e41e65174a092febad84fbe79c23a1b4b1e69b53e01625c13d16103f007545d442b31472ec')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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